Package index
Processing sequence
The primary sequence of preparing data, building models, and making maps. These functions normally spawn batch jobs on Unity via slurmcollie (except for screen which is intrinsically interactive), though you can run locally with local = TRUE.
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gather() - Gather and prepare GIS data from data sources
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screen() - Visually screen orthoimages via a web app
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derive() - Create derived variables
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sample() - Sample orthoimages for field-collected data
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prep_unet() - Pre-process data for U-Net
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fit() - Build statistical models of vegetation cover
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map() - Produce geoTIFF maps of predicted vegetation cover from fitted models
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mosaic() - Combines multiple maps, filling in missing data
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fitinfo() - Display information on model fits
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fitset() - Set model scores and comments
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fitpurge() - Purge selected fits from fits database
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mapinfo() - Display information on maps
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mappurge() - Purge selected maps from maps database
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assess() - Assess a model fit from validation data
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flights_report() - Produce reports on orthoimages for all sites
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sample_freq() - Create a frequency table of number of cells by subclass from field data
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importance() - Produce a summary of variable importance across multiple fits
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flightinfo() - Summarize orthos at a single site
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fieldinfo() - Summarize number of field-sampled polys and pixels by class and year
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sampleinfo() - Give summary of sample data file
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init() - Initialize marshmap with user parameters
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build_flights_db() - Build or update the flights database
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find_orthos() - Find orthophotos for a site
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maketiles() - Create tiles with numbered blocks
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refit() - Relaunches specified fits, purging the old job and fit
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upscale_clone() - Clones a site directory at a new grain
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upscale_more() - Adds more metrics to an already existing upscaled clone
slurmcollie functions
These functions are part of the slurmcollie package, used to manage batch jobs on the Unity cluster.