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Adds more metrics to an already existing upscaled clone

Source: R/upscale_more.R
upscale_more.Rd

  • this is experimental

Usage

upscale_more(
  site,
  newsite,
  cellsize = 1,
  vars = "{*}",
  minscore = 0,
  maxmissing = 20,
  metrics = "all",
  cache = TRUE,
  resources = NULL,
  local = FALSE,
  trap = TRUE,
  comment = NULL
)

Arguments

site

Site name

newsite

Name for cloned site

cellsize

Cell size for new site (m)

vars

File names, portable names, regex matching either, or search names selecting files to upscale. See Image naming in README for details. The default is {*}, which will include all variables.

minscore

Minimum score for orthos. Files with a minimum score of less than this are excluded. Default is 0, but rejected orthos are always excluded.

maxmissing

Maximum percent missing in orthos. Files with percent missing greater than this are excluded.

metrics

A list of metrics, or 'all' for all metrics. May include any of:

  • 'mean' Mean (may already have been done by upscale_clone)

  • sd Standard deviation

  • q05, q10, q25, median, q75, q90, and q95 Quantiles

  • r0595, r1090, iqr Quantile ranges: 5th-95th, 10th-90th, and interquartile range

  • skewness and kurtosis, for Ryan

cache

If TRUE, build cached images for screen

resources

Slurm launch resources. See launch. These take priority #' over the function's defaults.

local

If TRUE, run locally; otherwise, spawn a batch run on Unity

trap

If TRUE, trap errors in local mode; if FALSE, use normal R error handling. Use this for debugging. If you get unrecovered errors, the job won't be added to the jobs database. Has no effect if local = FALSE.

comment

Optional slurmcollie comment

Details

Note: all metrics must be added to pars.yml under category: derive.